DNA Library - CNR Echinococcoses (2018)

Restricted

Database

doi:10.25666/DATAUBFC-2018-05-16

Data creators : Centre Hospitalier Régional Universitaire de Besançon, Laboratoire Chrono-environnement (UMR 6249), Jenny Knapp ^[1]

Data collector : Centre Hospitalier Régional Universitaire de Besançon, Laboratoire Chrono-environnement (UMR 6249), Benoît Combes ^[2], Bruno Gottstein ^[3], Jenny Knapp ^[1], Francis Raoul ^[1] ^[4], Gérald Umhang ^[5]

[1] : Laboratoire Chrono-environnement (UMR 6249) (Université de Franche-Comté)

[2] : Entente de Lutte Interdépartementale contre les Zoonoses

[3] : Institut de Parasitologie de Berne

[4] : Observatoire des Sciences de l'Univers - Terre, Homme, Environnement, Temps, Astronomie (UAR 3245) (Université de Franche-Comté)

[5] : ANSES - Laboratoire National de Référence Echinococcus

Description :

DNA Library is a database associated to a web interface, created to improve the storage and the life of a biological sample collection, closely related to the research activities of the National Reference Center for Echinococcosis (CNR Echinococcoses, University Hospital of Besançon, France). A preliminary counting of DNA, copro-DNA, tissue samples stored in the Chrono-environnement laboratory (UFR SMP, UFC, unit of les Hauts du Chazal) was done. Identification of the containers, codes applicated to storage boxes, storage places and metadata associated allowed us to create this database in order to secure and manage valuable samples and data.

Disciplines :

ecology (applied biology - ecology), cell biology (fundamental biology), microbiology (fundamental biology), parasitology (fundamental biology), health care sciences & services (medical research), pathology (medical research)

Keywords :

echinococcosis, epidemiology, genotyping

Access details :

To access the data, please contact the scientific data manager.

General metadata

Data acquisition date : from 1 Jan 1980 ongoing

Data acquisition methods :

Observational data :
Echantillons de tissus animaux obtenus après autopsie
Echantillons coprologiques récoltés sur le terrain et géolocalisés
Experimental data :
Données issues de la biologie moléculaire après technique de PCR et séquençage
Extraction d'ADN sur les échantillons de tissus et les échantillons coprologiques

Update periodicity : as needed

Language : English (eng)

Formats : application/vnd.ms-excel, text/csv

Audience : University: master, Research

Coverages

Spatial coverage :

Monde: latitude between 85° N and 85° S, longitude between 180° W and 180° E

Time coverage :

1980 and after

Taxonomic coverage :

Hôtes définitifs et intermédiaires d'Echinococcus multilocularis

Species
Vulpes vulpes (Red fox), Homo sapiens (Human), Myodes glareolus (Bank vole), Arvicola terrestris (European water vole), Ellobius tancrei (Eastern Mole Vole), Microtus limnophilus (Lacustrine Vole), Microtus oeconomus (Toundra Vole), Rattus norvegicus (Brown Rat), Cricetulus kamensis (Tibetan Dwarf Hamster), Felis catus (Domestic Cat), Microtus arvalis (Common vole), Myodes rufocanus (Grey Red-backed Vole), Ondatra zibethicus (Common Muskrat)
Species
Echinococcus multilocularis (Echinococcus multilocularis tapeworm), Ondatra zibethicus (Common Muskrat), Castor fiber (European Beaver), Chlorocebus pygerythrus (Vervet Monkey), Gorilla gorilla (Western Gorilla), Lemur catta (Ring-tailed Lemur), Macaca tonkeana (Tonkean Macaque), Macaca fascicularis (Crab-eating Macaque), Meriones unguiculatus (Mongolian Jird), Echinococcus granulosus (Echinococcus granulosus tapeworm), Microtus levis (Southern vole), Myocastor coypus (Coypu), Nyctereutes procyonoides (Racoon dog), Sus scrofa (Wild boar)
Subspecies
Canis lupus familiaris (Dog), Sus domesticus (Domestic pig)